Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED02976.1Helicase conserved C-terminal domain-containing protein. (1853 aa)    
Predicted Functional Partners:
SED02942.1
Hypothetical protein.
       0.803
SED02916.1
Hypothetical protein.
       0.802
SED03079.1
Protein of unknown function.
 
     0.754
SED03103.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.430
SED03006.1
Protein of unknown function; Manually curated.
       0.404
SED03038.1
Hypothetical protein.
       0.404
SED02882.1
Helix-turn-helix.
       0.401
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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