Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB76617.1 | SEC61017.1 | SAMN04490357_0336 | SAMN04490357_2425 | Hypothetical protein. | ATP-dependent helicase HrpB. | 0.756 |
SEB76617.1 | SEC74694.1 | SAMN04490357_0336 | SAMN04490357_2795 | Hypothetical protein. | PELOTA RNA binding domain-containing protein. | 0.991 |
SEB76617.1 | SED12552.1 | SAMN04490357_0336 | SAMN04490357_3888 | Hypothetical protein. | Superfamily II DNA and RNA helicase. | 0.871 |
SEB76617.1 | pnp | SAMN04490357_0336 | SAMN04490357_5655 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.852 |
SEB76617.1 | rplC | SAMN04490357_0336 | SAMN04490357_4698 | Hypothetical protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.992 |
SEB76617.1 | rplX | SAMN04490357_0336 | SAMN04490357_4709 | Hypothetical protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.991 |
SEB76617.1 | rpsD | SAMN04490357_0336 | SAMN04490357_1926 | Hypothetical protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.992 |
SEB76617.1 | rpsE | SAMN04490357_0336 | SAMN04490357_4715 | Hypothetical protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.992 |
SEB76617.1 | rpsK | SAMN04490357_0336 | SAMN04490357_4724 | Hypothetical protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.992 |
SEC61017.1 | SEB76617.1 | SAMN04490357_2425 | SAMN04490357_0336 | ATP-dependent helicase HrpB. | Hypothetical protein. | 0.756 |
SEC61017.1 | SEC74694.1 | SAMN04490357_2425 | SAMN04490357_2795 | ATP-dependent helicase HrpB. | PELOTA RNA binding domain-containing protein. | 0.739 |
SEC61017.1 | SED12552.1 | SAMN04490357_2425 | SAMN04490357_3888 | ATP-dependent helicase HrpB. | Superfamily II DNA and RNA helicase. | 0.879 |
SEC61017.1 | rpsD | SAMN04490357_2425 | SAMN04490357_1926 | ATP-dependent helicase HrpB. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.967 |
SEC61017.1 | rpsE | SAMN04490357_2425 | SAMN04490357_4715 | ATP-dependent helicase HrpB. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.899 |
SEC61017.1 | rpsK | SAMN04490357_2425 | SAMN04490357_4724 | ATP-dependent helicase HrpB. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.957 |
SEC74694.1 | SEB76617.1 | SAMN04490357_2795 | SAMN04490357_0336 | PELOTA RNA binding domain-containing protein. | Hypothetical protein. | 0.991 |
SEC74694.1 | SEC61017.1 | SAMN04490357_2795 | SAMN04490357_2425 | PELOTA RNA binding domain-containing protein. | ATP-dependent helicase HrpB. | 0.739 |
SEC74694.1 | SED12552.1 | SAMN04490357_2795 | SAMN04490357_3888 | PELOTA RNA binding domain-containing protein. | Superfamily II DNA and RNA helicase. | 0.913 |
SEC74694.1 | rplC | SAMN04490357_2795 | SAMN04490357_4698 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
SEC74694.1 | rplX | SAMN04490357_2795 | SAMN04490357_4709 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
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