Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED34092.1Hypothetical protein. (451 aa)    
Predicted Functional Partners:
SED34062.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
    
  0.898
SED34129.1
Hypothetical protein.
       0.745
SEB95901.1
Hypothetical protein.
  
     0.714
SEC12070.1
Hypothetical protein.
  
     0.699
SED34162.1
Phosphotransferase enzyme family protein.
       0.690
SED08462.1
Hypothetical protein.
  
     0.678
SED34234.1
Hypothetical protein.
       0.649
SEC11762.1
Hypothetical protein.
  
     0.627
SEB75472.1
ABC-2 family transporter protein.
  
     0.612
SEE25203.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
  
     0.591
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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