Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED39580.1Alpha/beta hydrolase. (611 aa)    
Predicted Functional Partners:
SED39541.1
Hypothetical protein.
       0.799
SED39617.1
Hypothetical protein.
       0.773
SEB83586.1
Snapalysin; Belongs to the peptidase M7 family.
    
   0.482
SED76227.1
Trypsin.
    
   0.482
SED86778.1
Trypsin.
    
   0.482
SED73279.1
Type VII secretion integral membrane protein EccD.
  
     0.447
SED73066.1
Type VII secretion protein EccB.
  
     0.431
SED53004.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
     0.425
SED25636.1
Helix-turn-helix domain-containing protein.
  
     0.424
SED73017.1
Hypothetical protein.
  
     0.422
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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