STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED90214.1DNA-binding transcriptional regulator, MarR family. (150 aa)    
Predicted Functional Partners:
SED90183.1
Predicted arabinose efflux permease, MFS family.
 
     0.753
SEE14433.1
Protein of unknown function.
  
     0.564
SED96822.1
Nucleoside phosphorylase.
  
     0.510
SED26460.1
Hypothetical protein.
  
     0.476
SED07011.1
PTS system IIB component, Glc family /PTS system IIC component, Glc family.
     
 0.445
SEB83667.1
SnoaL-like domain-containing protein.
  
     0.437
SED88583.1
Protein of unknown function.
  
     0.437
Your Current Organism:
Streptomyces misionensis
NCBI taxonomy Id: 67331
Other names: ATCC 14991, ATCC 25475, BCRC 12094, CBS 885.69, CCRC 12094, CCRC:12094, DSM 40306, IFO 13063, ISP 5306, JCM 4497, NBRC 13063, NRRL B-3230, NRRL-ISP 5306, S. misionensis, Streptomyces misionesensis, VKM Ac-626
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.