Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SAMN05216505_101633 | SAMN05216505_101970 | SAMN05216505_101633 | SAMN05216505_101970 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S1P. | 0.973 |
| SAMN05216505_101633 | rplM | SAMN05216505_101633 | SAMN05216505_103405 | PELOTA RNA binding domain-containing protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| SAMN05216505_101633 | rpmA | SAMN05216505_101633 | SAMN05216505_101402 | PELOTA RNA binding domain-containing protein. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.476 |
| SAMN05216505_101633 | rpsG | SAMN05216505_101633 | SAMN05216505_103458 | PELOTA RNA binding domain-containing protein. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| SAMN05216505_101633 | rpsK | SAMN05216505_101633 | SAMN05216505_103416 | PELOTA RNA binding domain-containing protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| SAMN05216505_101970 | SAMN05216505_101633 | SAMN05216505_101970 | SAMN05216505_101633 | SSU ribosomal protein S1P. | PELOTA RNA binding domain-containing protein. | 0.973 |
| SAMN05216505_101970 | ndk | SAMN05216505_101970 | SAMN05216505_101386 | SSU ribosomal protein S1P. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.609 |
| SAMN05216505_101970 | rplM | SAMN05216505_101970 | SAMN05216505_103405 | SSU ribosomal protein S1P. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
| SAMN05216505_101970 | rplQ | SAMN05216505_101970 | SAMN05216505_103414 | SSU ribosomal protein S1P. | 50S ribosomal protein L17. | 0.995 |
| SAMN05216505_101970 | rplU | SAMN05216505_101970 | SAMN05216505_101401 | SSU ribosomal protein S1P. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| SAMN05216505_101970 | rpmA | SAMN05216505_101970 | SAMN05216505_101402 | SSU ribosomal protein S1P. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
| SAMN05216505_101970 | rpsG | SAMN05216505_101970 | SAMN05216505_103458 | SSU ribosomal protein S1P. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| SAMN05216505_101970 | rpsI | SAMN05216505_101970 | SAMN05216505_103404 | SSU ribosomal protein S1P. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
| SAMN05216505_101970 | rpsK | SAMN05216505_101970 | SAMN05216505_103416 | SSU ribosomal protein S1P. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| SAMN05216505_101970 | rpsT | SAMN05216505_101970 | SAMN05216505_101435 | SSU ribosomal protein S1P. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.848 |
| ndk | SAMN05216505_101970 | SAMN05216505_101386 | SAMN05216505_101970 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | SSU ribosomal protein S1P. | 0.609 |
| ndk | rplM | SAMN05216505_101386 | SAMN05216505_103405 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.991 |
| ndk | rplQ | SAMN05216505_101386 | SAMN05216505_103414 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 50S ribosomal protein L17. | 0.960 |
| ndk | rplU | SAMN05216505_101386 | SAMN05216505_101401 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.993 |
| ndk | rpmA | SAMN05216505_101386 | SAMN05216505_101402 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.988 |
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