Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SAMN05216505_101128 | SAMN05216505_105410 | SAMN05216505_101128 | SAMN05216505_105410 | Z1 domain-containing protein. | Cyclic nucleotide-binding domain-containing protein. | 0.849 |
SAMN05216505_101128 | rpoA | SAMN05216505_101128 | SAMN05216505_103415 | Z1 domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
SAMN05216505_101128 | rpoB | SAMN05216505_101128 | SAMN05216505_103462 | Z1 domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.417 |
SAMN05216505_101944 | SAMN05216505_104228 | SAMN05216505_101944 | SAMN05216505_104228 | Glutamate synthase (NADPH/NADH) large chain. | PAS domain S-box-containing protein. | 0.586 |
SAMN05216505_101944 | SAMN05216505_105410 | SAMN05216505_101944 | SAMN05216505_105410 | Glutamate synthase (NADPH/NADH) large chain. | Cyclic nucleotide-binding domain-containing protein. | 0.929 |
SAMN05216505_101944 | SAMN05216505_1085 | SAMN05216505_101944 | SAMN05216505_1085 | Glutamate synthase (NADPH/NADH) large chain. | Histidine kinase. | 0.957 |
SAMN05216505_101944 | SAMN05216505_1162 | SAMN05216505_101944 | SAMN05216505_1162 | Glutamate synthase (NADPH/NADH) large chain. | Polyketide synthase PksN. | 0.945 |
SAMN05216505_101944 | rpoA | SAMN05216505_101944 | SAMN05216505_103415 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.460 |
SAMN05216505_101944 | rpoB | SAMN05216505_101944 | SAMN05216505_103462 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.744 |
SAMN05216505_101944 | rpoC | SAMN05216505_101944 | SAMN05216505_103461 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.734 |
SAMN05216505_104228 | SAMN05216505_101944 | SAMN05216505_104228 | SAMN05216505_101944 | PAS domain S-box-containing protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.586 |
SAMN05216505_104228 | SAMN05216505_105410 | SAMN05216505_104228 | SAMN05216505_105410 | PAS domain S-box-containing protein. | Cyclic nucleotide-binding domain-containing protein. | 0.862 |
SAMN05216505_104228 | SAMN05216505_1085 | SAMN05216505_104228 | SAMN05216505_1085 | PAS domain S-box-containing protein. | Histidine kinase. | 0.999 |
SAMN05216505_104228 | SAMN05216505_1162 | SAMN05216505_104228 | SAMN05216505_1162 | PAS domain S-box-containing protein. | Polyketide synthase PksN. | 0.546 |
SAMN05216505_105278 | SAMN05216505_105410 | SAMN05216505_105278 | SAMN05216505_105410 | Uncharacterized protein. | Cyclic nucleotide-binding domain-containing protein. | 0.849 |
SAMN05216505_105278 | rpoA | SAMN05216505_105278 | SAMN05216505_103415 | Uncharacterized protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
SAMN05216505_105278 | rpoB | SAMN05216505_105278 | SAMN05216505_103462 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.417 |
SAMN05216505_105410 | SAMN05216505_101128 | SAMN05216505_105410 | SAMN05216505_101128 | Cyclic nucleotide-binding domain-containing protein. | Z1 domain-containing protein. | 0.849 |
SAMN05216505_105410 | SAMN05216505_101944 | SAMN05216505_105410 | SAMN05216505_101944 | Cyclic nucleotide-binding domain-containing protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.929 |
SAMN05216505_105410 | SAMN05216505_104228 | SAMN05216505_105410 | SAMN05216505_104228 | Cyclic nucleotide-binding domain-containing protein. | PAS domain S-box-containing protein. | 0.862 |
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