Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SAMN05216505_1011124 | SAMN05216505_101783 | SAMN05216505_1011124 | SAMN05216505_101783 | Magnesium chelatase subunit D. | Phytoene dehydrogenase-related protein. | 0.811 |
SAMN05216505_1011124 | SAMN05216505_102123 | SAMN05216505_1011124 | SAMN05216505_102123 | Magnesium chelatase subunit D. | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | 0.947 |
SAMN05216505_1011124 | hemE | SAMN05216505_1011124 | SAMN05216505_10236 | Magnesium chelatase subunit D. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.581 |
SAMN05216505_1011124 | hemH | SAMN05216505_1011124 | SAMN05216505_108112 | Magnesium chelatase subunit D. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.943 |
SAMN05216505_101719 | SAMN05216505_101854 | SAMN05216505_101719 | SAMN05216505_101854 | Heme oxygenase. | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.897 |
SAMN05216505_101719 | SAMN05216505_1133 | SAMN05216505_101719 | SAMN05216505_1133 | Heme oxygenase. | annotation not available | 0.912 |
SAMN05216505_101719 | ctaB | SAMN05216505_101719 | SAMN05216505_1011051 | Heme oxygenase. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.897 |
SAMN05216505_101719 | hemE | SAMN05216505_101719 | SAMN05216505_10236 | Heme oxygenase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.435 |
SAMN05216505_101719 | hemH | SAMN05216505_101719 | SAMN05216505_108112 | Heme oxygenase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.931 |
SAMN05216505_101783 | SAMN05216505_1011124 | SAMN05216505_101783 | SAMN05216505_1011124 | Phytoene dehydrogenase-related protein. | Magnesium chelatase subunit D. | 0.811 |
SAMN05216505_101783 | SAMN05216505_102124 | SAMN05216505_101783 | SAMN05216505_102124 | Phytoene dehydrogenase-related protein. | Chlorite dismutase. | 0.581 |
SAMN05216505_101783 | hemE | SAMN05216505_101783 | SAMN05216505_10236 | Phytoene dehydrogenase-related protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.916 |
SAMN05216505_101783 | hemH | SAMN05216505_101783 | SAMN05216505_108112 | Phytoene dehydrogenase-related protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.895 |
SAMN05216505_101854 | SAMN05216505_101719 | SAMN05216505_101854 | SAMN05216505_101719 | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Heme oxygenase. | 0.897 |
SAMN05216505_101854 | SAMN05216505_1133 | SAMN05216505_101854 | SAMN05216505_1133 | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | annotation not available | 0.909 |
SAMN05216505_101854 | hemH | SAMN05216505_101854 | SAMN05216505_108112 | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.919 |
SAMN05216505_102123 | SAMN05216505_1011124 | SAMN05216505_102123 | SAMN05216505_1011124 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Magnesium chelatase subunit D. | 0.947 |
SAMN05216505_102123 | SAMN05216505_102124 | SAMN05216505_102123 | SAMN05216505_102124 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Chlorite dismutase. | 0.930 |
SAMN05216505_102123 | hemE | SAMN05216505_102123 | SAMN05216505_10236 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.998 |
SAMN05216505_102123 | hemH | SAMN05216505_102123 | SAMN05216505_108112 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.998 |
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