Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SAMN05216505_1011074 | SAMN05216505_11881 | Uncharacterized protein. | DUF397 domain-containing protein. | 0.574 |
SAMN05216505_102463 | SAMN05216505_11881 | Uncharacterized protein. | DUF397 domain-containing protein. | 0.563 |
SAMN05216505_11657 | SAMN05216505_11881 | Anti-sigma regulatory factor (Ser/Thr protein kinase). | DUF397 domain-containing protein. | 0.560 |
SAMN05216505_11657 | SAMN05216505_12123 | Anti-sigma regulatory factor (Ser/Thr protein kinase). | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.529 |
SAMN05216505_11777 | SAMN05216505_11881 | Transcriptional regulator, contains XRE-family HTH domain. | DUF397 domain-containing protein. | 0.741 |
SAMN05216505_11777 | SAMN05216505_12123 | Transcriptional regulator, contains XRE-family HTH domain. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.818 |
SAMN05216505_11865 | SAMN05216505_11866 | Uncharacterized protein. | Type VII secretion protein EccE. | 0.971 |
SAMN05216505_11865 | SAMN05216505_11867 | Uncharacterized protein. | Type VII secretion protein EccB. | 0.935 |
SAMN05216505_11865 | SAMN05216505_11868 | Uncharacterized protein. | Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family. | 0.784 |
SAMN05216505_11865 | SAMN05216505_11881 | Uncharacterized protein. | DUF397 domain-containing protein. | 0.640 |
SAMN05216505_11866 | SAMN05216505_11865 | Type VII secretion protein EccE. | Uncharacterized protein. | 0.971 |
SAMN05216505_11866 | SAMN05216505_11867 | Type VII secretion protein EccE. | Type VII secretion protein EccB. | 0.962 |
SAMN05216505_11866 | SAMN05216505_11868 | Type VII secretion protein EccE. | Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family. | 0.792 |
SAMN05216505_11866 | SAMN05216505_11881 | Type VII secretion protein EccE. | DUF397 domain-containing protein. | 0.663 |
SAMN05216505_11867 | SAMN05216505_11865 | Type VII secretion protein EccB. | Uncharacterized protein. | 0.935 |
SAMN05216505_11867 | SAMN05216505_11866 | Type VII secretion protein EccB. | Type VII secretion protein EccE. | 0.962 |
SAMN05216505_11867 | SAMN05216505_11868 | Type VII secretion protein EccB. | Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family. | 0.926 |
SAMN05216505_11867 | SAMN05216505_11881 | Type VII secretion protein EccB. | DUF397 domain-containing protein. | 0.734 |
SAMN05216505_11868 | SAMN05216505_11865 | Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family. | Uncharacterized protein. | 0.784 |
SAMN05216505_11868 | SAMN05216505_11866 | Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family. | Type VII secretion protein EccE. | 0.792 |
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