STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216505_11911Phytanoyl-CoA dioxygenase (PhyH). (305 aa)    
Predicted Functional Partners:
SAMN05216505_11910
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
     0.707
SAMN05216505_106135
Tetratricopeptide repeat-containing protein.
  
     0.704
SAMN05216505_1199
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
    0.676
ectC
L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
    
  0.630
SAMN05216505_11390
Acyl transferase domain-containing protein.
 
  
 0.577
SAMN05216505_101611
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
  
   
 0.562
SAMN05216505_11913
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
     
 0.551
SAMN05216505_11912
annotation not available
       0.538
SAMN05216505_10541
Condensation domain-containing protein.
 
 
 0.526
SAMN05216505_10232
Acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.524
Your Current Organism:
Streptomyces prasinopilosus
NCBI taxonomy Id: 67344
Other names: ATCC 19799, BCRC 13678, CBS 551.68, CCRC 13678, CCRC:13678, CGMCC 4.3504 [[Streptomyces emeiensis]], DSM 40098, DSM 41884 [[Streptomyces emeiensis]], IFO 12809, ISP 5098, JCM 15479 [[Streptomyces emeiensis]], JCM 4207, JCM 4404, LMG 19345, LMG:19345, NBRC 12809, NCIMB 9842, NRRL B-2711, NRRL-ISP 5098, S. prasinopilosus, Streptomyces emeiensis, Streptomyces emeiensis Sun et al. 2007, Streptomyces sp. 034776, UNIQEM 185, strain 4776 [[Streptomyces emeiensis]]
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