STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO38747.1Predicted O-methyltransferase YrrM. (212 aa)    
Predicted Functional Partners:
SEO38794.1
Hypothetical protein.
 
     0.810
SEO38810.1
Methyltransferase domain-containing protein.
 
     0.809
SEO38815.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.778
SEO38775.1
Transcriptional regulator, TraR/DksA family.
       0.776
SEO38718.1
Uncharacterized membrane protein.
       0.773
SEO38705.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
       0.634
SEP09889.1
Thioesterase-like superfamily protein.
  
     0.446
SEO38678.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
  
    0.436
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.