Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO41162.1 | SEO41197.1 | SAMN05660991_00174 | SAMN05660991_00176 | DNA ligase D, polymerase domain-containing protein. | Hypothetical protein. | 0.495 |
SEO41162.1 | SEO41213.1 | SAMN05660991_00174 | SAMN05660991_00177 | DNA ligase D, polymerase domain-containing protein. | Sortase A. | 0.494 |
SEO41162.1 | SEO41230.1 | SAMN05660991_00174 | SAMN05660991_00178 | DNA ligase D, polymerase domain-containing protein. | ATP-dependent DNA ligase. | 0.994 |
SEO41162.1 | SEO41253.1 | SAMN05660991_00174 | SAMN05660991_00179 | DNA ligase D, polymerase domain-containing protein. | Signal peptidase I. | 0.494 |
SEO41162.1 | SEO43763.1 | SAMN05660991_00174 | SAMN05660991_00298 | DNA ligase D, polymerase domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.826 |
SEO41162.1 | SEO85593.1 | SAMN05660991_00174 | SAMN05660991_02046 | DNA ligase D, polymerase domain-containing protein. | 5'-3' exonuclease. | 0.404 |
SEO41162.1 | ku | SAMN05660991_00174 | SAMN05660991_00296 | DNA ligase D, polymerase domain-containing protein. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.897 |
SEO41197.1 | SEO41162.1 | SAMN05660991_00176 | SAMN05660991_00174 | Hypothetical protein. | DNA ligase D, polymerase domain-containing protein. | 0.495 |
SEO41197.1 | SEO41213.1 | SAMN05660991_00176 | SAMN05660991_00177 | Hypothetical protein. | Sortase A. | 0.910 |
SEO41197.1 | SEO41230.1 | SAMN05660991_00176 | SAMN05660991_00178 | Hypothetical protein. | ATP-dependent DNA ligase. | 0.773 |
SEO41197.1 | SEO41253.1 | SAMN05660991_00176 | SAMN05660991_00179 | Hypothetical protein. | Signal peptidase I. | 0.773 |
SEO41213.1 | SEO41162.1 | SAMN05660991_00177 | SAMN05660991_00174 | Sortase A. | DNA ligase D, polymerase domain-containing protein. | 0.494 |
SEO41213.1 | SEO41197.1 | SAMN05660991_00177 | SAMN05660991_00176 | Sortase A. | Hypothetical protein. | 0.910 |
SEO41213.1 | SEO41230.1 | SAMN05660991_00177 | SAMN05660991_00178 | Sortase A. | ATP-dependent DNA ligase. | 0.773 |
SEO41213.1 | SEO41253.1 | SAMN05660991_00177 | SAMN05660991_00179 | Sortase A. | Signal peptidase I. | 0.808 |
SEO41230.1 | SEO41162.1 | SAMN05660991_00178 | SAMN05660991_00174 | ATP-dependent DNA ligase. | DNA ligase D, polymerase domain-containing protein. | 0.994 |
SEO41230.1 | SEO41197.1 | SAMN05660991_00178 | SAMN05660991_00176 | ATP-dependent DNA ligase. | Hypothetical protein. | 0.773 |
SEO41230.1 | SEO41213.1 | SAMN05660991_00178 | SAMN05660991_00177 | ATP-dependent DNA ligase. | Sortase A. | 0.773 |
SEO41230.1 | SEO41253.1 | SAMN05660991_00178 | SAMN05660991_00179 | ATP-dependent DNA ligase. | Signal peptidase I. | 0.882 |
SEO41230.1 | SEO43763.1 | SAMN05660991_00178 | SAMN05660991_00298 | ATP-dependent DNA ligase. | Bifunctional non-homologous end joining protein LigD. | 0.989 |
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