STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO42628.1Nitrogen fixation protein NifU. (158 aa)    
Predicted Functional Partners:
SEO90669.1
Cysteine desulfurase.
  
 0.999
SEO42589.1
Fe-S cluster assembly ATP-binding protein.
 
  
 0.997
SEO42606.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.996
SEO42660.1
Metal-sulfur cluster biosynthetic enzyme.
 
    0.996
SEO42539.1
Fe-S cluster assembly protein SufD.
 
  
 0.992
SEO42522.1
Iron-regulated ABC transporter membrane component SufB.
 
  
 0.988
SEO46176.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.978
SEP30208.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.967
SEP00163.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.964
SEP29906.1
Pyridoxal 5-phosphate dependent beta-lyase.
 
 0.956
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.