STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO53702.1SDR family mycofactocin-dependent oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (273 aa)    
Predicted Functional Partners:
SEO53674.1
Cytochrome P450.
  
    0.781
SEP19852.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.711
SEP01407.1
Cytochrome P450.
   
 0.684
SEP00218.1
Mycofactocin radical SAM maturase.
  
     0.663
SEO54640.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.658
SEO47210.1
Short-chain dehydrogenase.
  
 
   0.652
SEP18307.1
[acyl-carrier-protein] S-malonyltransferase.
  
 0.647
SEP05418.1
Short chain dehydrogenase.
  
 
  0.644
SEO96592.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.625
SEP23421.1
Von Willebrand factor type A domain-containing protein.
  
     0.622
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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