STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO55040.1Probable F420-dependent oxidoreductase, Rv2161c family. (312 aa)    
Predicted Functional Partners:
SEO55021.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
      0.773
SEO70956.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
     0.688
SEP24292.1
Alkanesulfonate monooxygenase.
  
     0.680
SEP19487.1
Probable F420-dependent oxidoreductase, MSMEG_2256 family.
  
     0.648
SEP10134.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.634
SEO70975.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.611
SEP24284.1
Taurine transport system permease protein.
 
 
  0.513
SEO78678.1
NitT/TauT family transport system permease protein.
 
 
  0.483
SEO44318.1
FMN reductase.
  
  0.467
SEO46157.1
FMN reductase.
  
  0.465
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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