Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO48157.1 | SEO66041.1 | SAMN05660991_00519 | SAMN05660991_01123 | Hypothetical protein. | Hypothetical protein. | 0.932 |
SEO48157.1 | nusG | SAMN05660991_00519 | SAMN05660991_01171 | Hypothetical protein. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.909 |
SEO48157.1 | rplK | SAMN05660991_00519 | SAMN05660991_01172 | Hypothetical protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.962 |
SEO48157.1 | rpoB | SAMN05660991_00519 | SAMN05660991_01187 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SEO48157.1 | rpoC | SAMN05660991_00519 | SAMN05660991_01188 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SEO48157.1 | rpsB | SAMN05660991_00519 | SAMN05660991_02185 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.975 |
SEO48157.1 | rpsE | SAMN05660991_00519 | SAMN05660991_01214 | Hypothetical protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.976 |
SEO48157.1 | rpsG | SAMN05660991_00519 | SAMN05660991_01193 | Hypothetical protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.975 |
SEO48157.1 | rpsJ | SAMN05660991_00519 | SAMN05660991_01196 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.977 |
SEO66041.1 | SEO48157.1 | SAMN05660991_01123 | SAMN05660991_00519 | Hypothetical protein. | Hypothetical protein. | 0.932 |
SEO66041.1 | nusG | SAMN05660991_01123 | SAMN05660991_01171 | Hypothetical protein. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.944 |
SEO66041.1 | rplK | SAMN05660991_01123 | SAMN05660991_01172 | Hypothetical protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.968 |
SEO66041.1 | rpoA | SAMN05660991_01123 | SAMN05660991_01224 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.968 |
SEO66041.1 | rpoB | SAMN05660991_01123 | SAMN05660991_01187 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
SEO66041.1 | rpoC | SAMN05660991_01123 | SAMN05660991_01188 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.957 |
SEO66041.1 | rpsB | SAMN05660991_01123 | SAMN05660991_02185 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.917 |
SEO66041.1 | rpsE | SAMN05660991_01123 | SAMN05660991_01214 | Hypothetical protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.915 |
SEO66041.1 | rpsG | SAMN05660991_01123 | SAMN05660991_01193 | Hypothetical protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.956 |
SEO66041.1 | rpsJ | SAMN05660991_01123 | SAMN05660991_01196 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.956 |
nusG | SEO48157.1 | SAMN05660991_01171 | SAMN05660991_00519 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | Hypothetical protein. | 0.909 |
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