Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO39822.1 | SEO56420.1 | SAMN05660991_00110 | SAMN05660991_00740 | 3-hydroxyacyl-CoA dehydrogenase. | Polyhydroxyalkanoate synthase. | 0.800 |
SEO39822.1 | SEO74825.1 | SAMN05660991_00110 | SAMN05660991_01499 | 3-hydroxyacyl-CoA dehydrogenase. | Acyl dehydratase. | 0.697 |
SEO39822.1 | SEP22553.1 | SAMN05660991_00110 | SAMN05660991_04048 | 3-hydroxyacyl-CoA dehydrogenase. | acetoacetyl-CoA synthetase. | 0.975 |
SEO39822.1 | SEP25856.1 | SAMN05660991_00110 | SAMN05660991_04331 | 3-hydroxyacyl-CoA dehydrogenase. | acetyl-CoA carboxylase, biotin carboxylase subunit. | 0.896 |
SEO56420.1 | SEO39822.1 | SAMN05660991_00740 | SAMN05660991_00110 | Polyhydroxyalkanoate synthase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.800 |
SEO56420.1 | SEO74825.1 | SAMN05660991_00740 | SAMN05660991_01499 | Polyhydroxyalkanoate synthase. | Acyl dehydratase. | 0.606 |
SEO57142.1 | SEO74825.1 | SAMN05660991_00775 | SAMN05660991_01499 | Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | Acyl dehydratase. | 0.651 |
SEO57142.1 | sucC | SAMN05660991_00775 | SAMN05660991_01274 | Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.427 |
SEO74806.1 | SEO74825.1 | SAMN05660991_01498 | SAMN05660991_01499 | 2-methylfumaryl-CoA isomerase; Belongs to the CoA-transferase III family. | Acyl dehydratase. | 0.756 |
SEO74806.1 | SEO74841.1 | SAMN05660991_01498 | SAMN05660991_01500 | 2-methylfumaryl-CoA isomerase; Belongs to the CoA-transferase III family. | Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | 0.618 |
SEO74825.1 | SEO39822.1 | SAMN05660991_01499 | SAMN05660991_00110 | Acyl dehydratase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.697 |
SEO74825.1 | SEO56420.1 | SAMN05660991_01499 | SAMN05660991_00740 | Acyl dehydratase. | Polyhydroxyalkanoate synthase. | 0.606 |
SEO74825.1 | SEO57142.1 | SAMN05660991_01499 | SAMN05660991_00775 | Acyl dehydratase. | Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | 0.651 |
SEO74825.1 | SEO74806.1 | SAMN05660991_01499 | SAMN05660991_01498 | Acyl dehydratase. | 2-methylfumaryl-CoA isomerase; Belongs to the CoA-transferase III family. | 0.756 |
SEO74825.1 | SEO74841.1 | SAMN05660991_01499 | SAMN05660991_01500 | Acyl dehydratase. | Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. | 0.924 |
SEO74825.1 | SEO74851.1 | SAMN05660991_01499 | SAMN05660991_01501 | Acyl dehydratase. | Protein of unknown function. | 0.574 |
SEO74825.1 | SEO76924.1 | SAMN05660991_01499 | SAMN05660991_01635 | Acyl dehydratase. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.615 |
SEO74825.1 | SEP22553.1 | SAMN05660991_01499 | SAMN05660991_04048 | Acyl dehydratase. | acetoacetyl-CoA synthetase. | 0.605 |
SEO74825.1 | SEP25856.1 | SAMN05660991_01499 | SAMN05660991_04331 | Acyl dehydratase. | acetyl-CoA carboxylase, biotin carboxylase subunit. | 0.594 |
SEO74825.1 | sucC | SAMN05660991_01499 | SAMN05660991_01274 | Acyl dehydratase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.578 |
page 1 of 2