STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO78917.1Lysophospholipase L1. (339 aa)    
Predicted Functional Partners:
SEO78906.1
Uncharacterized conserved protein, DUF2252 family.
 
     0.595
SEO47440.1
MT0933-like antitoxin protein.
  
 0.571
SEO75193.1
Hypothetical protein.
  
 0.571
SEO78928.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.561
SEO44233.1
Arabinofuranan 3-O-arabinosyltransferase.
 
     0.544
SEO44204.1
Protein of unknown function.
  
     0.537
SEO71706.1
Hypothetical protein.
  
     0.528
SEP21666.1
Von Willebrand factor type A domain-containing protein.
  
     0.478
SEO68173.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.475
SEO71447.1
Hypothetical protein.
  
     0.472
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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