STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO84370.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
SEO60467.1
Hypothetical protein.
  
     0.570
SEO39355.1
Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains.
  
     0.531
SEO84380.1
Long-chain acyl-CoA synthetase.
       0.512
SEO84393.1
Hypothetical membrane protein.
       0.512
SEO84411.1
Hypothetical protein.
       0.512
SEO84351.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
       0.503
SEO84209.1
Protein of unknown function.
  
     0.431
SEP12386.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.424
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.