STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO86379.1Long-chain acyl-CoA synthetase. (533 aa)    
Predicted Functional Partners:
SEO86403.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.824
SEO86437.1
Hypothetical protein.
 
     0.812
SEO86418.1
Acyl dehydratase.
 
     0.804
SEO86457.1
Acetyl-CoA acetyltransferase.
  
    0.795
SEO86497.1
Phosphotransferase enzyme family protein.
  
    0.779
SEO86477.1
Probable F420-dependent oxidoreductase, MSMEG_2249 family.
       0.773
SEP25856.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
 
 0.744
SEO86372.1
Cytochrome P450.
  
  0.730
SEP22553.1
acetoacetyl-CoA synthetase.
  
 
 0.689
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.677
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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