STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO94352.1Glyoxylase, beta-lactamase superfamily II. (350 aa)    
Predicted Functional Partners:
SEO70169.1
Glyoxylase, beta-lactamase superfamily II.
  
  0.833
SEO72027.1
Adenylyltransferase and sulfurtransferase.
  
 0.686
SEO94335.1
PH domain-containing protein.
       0.562
SEP02223.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
    
 0.537
SEO38815.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.510
SEO94361.1
uroporphyrinogen-III synthase.
       0.509
SEO91120.1
DNA-binding transcriptional regulator, CsgD family.
  
 
   0.499
SEP02618.1
Glyoxylase, beta-lactamase superfamily II.
      
 0.465
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.409
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.403
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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