STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP07255.1Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain. (213 aa)    
Predicted Functional Partners:
SEP07265.1
RNA polymerase sigma-70 factor, ECF subfamily.
   0.918
SEP07237.1
Copper transport protein.
 
     0.866
SEO59537.1
Protein of unknown function.
  
     0.754
SEP07226.1
Uncharacterized protein YcnI.
      0.750
SEO90931.1
Predicted metalloprotease.
  
     0.727
SEO90918.1
Predicted metalloprotease.
  
     0.721
SEP17053.1
DNA-binding transcriptional regulator of glucitol operon.
  
     0.697
SEP07198.1
Hypothetical protein.
       0.688
SEP07212.1
Protein SCO1/2.
       0.686
SEP26969.1
Predicted metalloprotease.
  
     0.680
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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