STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP15464.1Diguanylate cyclase (GGDEF) domain-containing protein. (308 aa)    
Predicted Functional Partners:
SEP25670.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.939
SEP25566.1
Anti-anti-sigma factor.
  
 0.892
SEO90490.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.887
SEO66780.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.817
SEP05754.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
  0.816
SEO91156.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.784
SEP30296.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
  0.741
SEO61216.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.668
SEO75679.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.668
SEO43614.1
Anti-anti-sigma factor.
  
 0.666
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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