STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP20058.1Hypothetical protein. (429 aa)    
Predicted Functional Partners:
SEO66842.1
Acyl dehydratase; Belongs to the UPF0336 family.
  
 
 0.887
SEP20076.1
Enoyl-CoA hydratase/carnithine racemase.
 
  0.877
SEP20032.1
DNA-binding transcriptional regulator, FadR family.
 
     0.810
SEP20068.1
Acyl-CoA dehydrogenase.
  
    0.792
SEP20042.1
Acyl-CoA dehydrogenase.
 
    0.763
SEP20084.1
Probable F420-dependent oxidoreductase, Rv2161c family.
 
     0.739
SEP27205.1
Uncharacterized OB-fold protein, contains Zn-ribbon domain.
 
   0.739
SEO44376.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.738
SEP20049.1
Enoyl-CoA hydratase/carnithine racemase.
 
  0.738
SEO44392.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.737
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.