STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP20098.1Choline dehydrogenase. (506 aa)    
Predicted Functional Partners:
SEP16995.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
   
 
 0.827
SEO46210.1
Sulfotransferase family protein.
    
 0.709
SEO87198.1
Tetratricopeptide repeat-containing protein.
    
 0.709
SEO87249.1
Hypothetical protein.
    
 0.709
SEP10141.1
Tetratricopeptide repeat-containing protein.
    
 0.709
SEO84059.1
Ankyrin repeat.
    
 0.699
SEO43948.1
Hypothetical protein.
    
 0.696
SEO67135.1
Mce-associated membrane protein.
    
 0.696
SEO67149.1
Hypothetical protein.
    
 0.696
SEP04972.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
  0.570
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.