STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP22842.1O-antigen ligase. (463 aa)    
Predicted Functional Partners:
SEP21469.1
Sugar transferase.
 
  
 0.857
SEP21273.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.831
SEP22835.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.828
SEP21308.1
Predicted homoserine dehydrogenase, contains C-terminal SAF domain.
  
     0.555
SEP22848.1
Chain length determinant protein.
  
  
 0.553
SEP22775.1
O-antigen ligase like membrane protein.
 
     0.537
SEP21597.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
 
 0.507
SEP22813.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.472
SEP02335.1
Glycerophosphoryl diester phosphodiesterase.
  
     0.431
SEP22782.1
Fucose 4-O-acetylase.
  
    0.400
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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