STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP23552.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (408 aa)    
Predicted Functional Partners:
SEP23556.1
3-hydroxyisobutyrate dehydrogenase.
      0.773
SEO74806.1
2-methylfumaryl-CoA isomerase; Belongs to the CoA-transferase III family.
  
     0.770
SEP23673.1
CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.770
SEO47256.1
CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.768
SEP23562.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
     0.629
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.505
SEP23502.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.499
SEP23542.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.495
SEP23591.1
Ferredoxin.
 
     0.470
SEP23570.1
3-hydroxyisobutyrate dehydrogenase.
       0.457
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.