STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP23620.1Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. (483 aa)    
Predicted Functional Partners:
SEP04522.1
L-proline dehydrogenase.
 
 
 0.821
SEO96592.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.785
SEO77016.1
Succinate dehydrogenase subunit A.
   
  0.773
SEO77025.1
Succinate dehydrogenase subunit B.
   
 
 0.756
SEO82563.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.749
SEO77951.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.667
SEP10052.1
Citrate synthase; Belongs to the citrate synthase family.
  
  0.661
SEO91667.1
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.655
SEP21144.1
phenylacetate-CoA ligase.
   
 0.632
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.619
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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