STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP23668.1Predicted amidohydrolase YtcJ. (470 aa)    
Predicted Functional Partners:
SEP23673.1
CoA-transferase family III; Belongs to the CoA-transferase III family.
 
     0.870
SEP23687.1
Enoyl-CoA hydratase/carnithine racemase.
 
     0.777
SEO85751.1
UPF0716 protein FxsA.
  
    0.711
SEP20429.1
SnoaL-like domain-containing protein.
 
     0.701
SEP08577.1
Amidohydrolase.
  
     0.683
SEP23542.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
     0.668
SEP27126.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.663
SEO57249.1
SnoaL-like domain-containing protein.
  
    0.657
SEP27996.1
Amidohydrolase.
  
     0.652
SEO40580.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.648
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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