STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP27877.1Pilus assembly protein CpaF. (380 aa)    
Predicted Functional Partners:
SEP27892.1
Type II secretion system (T2SS), protein F.
 
  
 0.890
SEP17718.1
Tight adherence protein C.
 
  
 0.874
SEP17728.1
Tight adherence protein B.
 
  
 0.873
SEP27884.1
Tight adherence protein B.
  
  
 0.868
SEP27872.1
Helicase/secretion neighborhood CpaE-like protein.
      0.823
SEO75372.1
Tight adherence protein C.
 
  
 0.768
SEP27898.1
Protein of unknown function.
     
 0.646
SEP27863.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.553
SEP17753.1
Pilus assembly protein CpaE.
 
  
 0.514
SEP17785.1
TadE-like protein.
 
    0.498
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.