STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001544075_01556Unannotated protein. (291 aa)    
Predicted Functional Partners:
GCA_001544075_01553
Unannotated protein.
 
  
 0.916
GCA_001544075_01555
Unannotated protein.
 
     0.864
GCA_001544075_01551
Unannotated protein.
 
 
 0.862
GCA_001544075_01554
Unannotated protein.
 
 
 0.775
GCA_001544075_03455
Unannotated protein.
  
 
 0.726
GCA_001544075_01557
Unannotated protein.
       0.551
GCA_001544075_01043
Unannotated protein.
   
    0.538
GCA_001544075_00151
Unannotated protein.
     
  0.499
GCA_001544075_00165
Unannotated protein.
     
  0.499
GCA_001544075_00174
Unannotated protein.
     
  0.499
Your Current Organism:
Comamonas terrae
NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.