STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001544075_02005Unannotated protein. (322 aa)    
Predicted Functional Partners:
GCA_001544075_01719
Unannotated protein.
 
0.976
GCA_001544075_00784
Unannotated protein.
  
  0.963
GCA_001544075_00782
Unannotated protein.
  
 0.960
GCA_001544075_00783
Unannotated protein.
  
 0.956
GCA_001544075_02004
Unannotated protein.
 
 
 0.955
GCA_001544075_00772
Unannotated protein.
    
 0.954
GCA_001544075_02001
Unannotated protein.
 
 
 0.954
GCA_001544075_00778
Unannotated protein.
  
 0.951
GCA_001544075_01169
Unannotated protein.
   
 0.938
GCA_001544075_00777
Unannotated protein.
  
 0.935
Your Current Organism:
Comamonas terrae
NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.