STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001544075_03397Unannotated protein. (161 aa)    
Predicted Functional Partners:
GCA_001544075_03120
Unannotated protein.
   
   0.888
GCA_001544075_04210
Unannotated protein.
   
   0.870
GCA_001544075_02199
Unannotated protein.
    
 
 0.782
GCA_001544075_03398
Unannotated protein.
       0.522
GCA_001544075_04203
Unannotated protein.
   
    0.469
GCA_001544075_00087
Unannotated protein.
  
    0.431
GCA_001544075_02517
Unannotated protein.
  
     0.431
GCA_001544075_03161
Unannotated protein.
   
   0.424
GCA_001544075_02846
Unannotated protein.
  
    0.409
Your Current Organism:
Comamonas terrae
NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.