STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718635_01937Unannotated protein. (319 aa)    
Predicted Functional Partners:
ADK38_03190
Unannotated protein.
 
     0.774
ADK38_03170
Unannotated protein.
  
     0.751
ADK38_03175
Unannotated protein.
 
     0.749
ADK38_03180
Unannotated protein.
 
     0.748
ADK38_03160
Unannotated protein.
 
     0.746
cas1
Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
     0.736
ADK38_29205
Unannotated protein.
  
  
 0.699
ADK38_42740
Unannotated protein.
  
  
 0.699
GCA_000718635_03062
Unannotated protein.
 
     0.626
ADK38_15385
Unannotated protein.
 
     0.558
Your Current Organism:
Streptomyces varsoviensis
NCBI taxonomy Id: 67373
Other names: ATCC 14631c, ATCC 25505, Actinomyces varsoviensis, BCRC 12647, CBS 357.64, CBS 647.69, CCRC 12647, CCRC:12647, DSM 40346, IFO 13093, IMET 43351, ISP 5346, JCM 4303, JCM 4523, NBRC 13093, NCIMB 9522, NRRL B-3589, NRRL-ISP 5346, S. varsoviensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.