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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUN04946.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
KUN04942.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
KUN04943.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
AQI95_18955
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
  0.558
KUN04945.1
DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
KUN04941.1
Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
       0.511
AQI95_29225
Glycogen phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
KUN03936.1
Ionic transporter y4hA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.455
KUN04944.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
KUN09893.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.421
Your Current Organism:
Streptomyces yokosukanensis
NCBI taxonomy Id: 67386
Other names: ATCC 25520, BCRC 11875, CBS 662.69, CCRC 11875, CCRC:11875, DSM 40224, IFO 13108, ISP 5224, JCM 4137, JCM 4559, NBRC 13108, NRRL B-3353, NRRL-ISP 5224, S. yokosukanensis, Streptomyces yokosukensis
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