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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUN03783.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)    
Predicted Functional Partners:
KUN03083.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.888
KUN04834.1
Phytoene/squalene synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.876
KUN03082.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.850
KUN03784.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.832
KUN04147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.823
KUN04082.1
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.713
KUN03785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
KUN04148.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
KUN03084.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.678
KUN03786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
Your Current Organism:
Streptomyces yokosukanensis
NCBI taxonomy Id: 67386
Other names: ATCC 25520, BCRC 11875, CBS 662.69, CCRC 11875, CCRC:11875, DSM 40224, IFO 13108, ISP 5224, JCM 4137, JCM 4559, NBRC 13108, NRRL B-3353, NRRL-ISP 5224, S. yokosukanensis, Streptomyces yokosukensis
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