Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KUN02823.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)    
Predicted Functional Partners:
KUN02991.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.941
KUN02824.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
KUN02822.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.857
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.573
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.573
KUN02417.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
KUN07195.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.461
KUN02916.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.445
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.443
KUN07471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
Your Current Organism:
Streptomyces yokosukanensis
NCBI taxonomy Id: 67386
Other names: ATCC 25520, BCRC 11875, CBS 662.69, CCRC 11875, CCRC:11875, DSM 40224, IFO 13108, ISP 5224, JCM 4137, JCM 4559, NBRC 13108, NRRL B-3353, NRRL-ISP 5224, S. yokosukanensis, Streptomyces yokosukensis
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