STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB04016.1PFAM: Aminotransferase class I and II. (396 aa)    
Predicted Functional Partners:
AGB05208.1
PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.920
AGB04506.1
PFAM: Aminotransferase class I and II.
  
  
 
0.911
AGB04349.1
PFAM: Aminotransferase class I and II.
  
  
 
0.909
AGB03998.1
Aspartate 4-decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: aspartate 4-decarboxylase.
     
 
0.900
AGB04912.1
PFAM: Isocitrate/isopropylmalate dehydrogenase.
 
 
 0.850
AGB04864.1
2-oxoacid:ferredoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
  
 
 0.813
AGB04865.1
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Transketolase, C-terminal domain.
  
 
 0.812
AGB04863.1
PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.
    
 0.811
AGB05012.1
PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region.
    
 0.809
AGB04866.1
Hypothetical protein.
    
 0.804
Your Current Organism:
Aciduliprofundum sp. MAR08339
NCBI taxonomy Id: 673860
Other names: A. sp. MAR08-339, Aciduliprofundum sp. MAR08-339
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