STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_00185Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)    
Predicted Functional Partners:
VM_01785
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.942
VM_01775
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.901
VM_01770
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.898
smg
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Smg family.
 
     0.883
VM_01765
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.871
dprA
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.851
VM_00200
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.837
VM_01780
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.762
VM_01445
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.760
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.