STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_00185Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)    
Predicted Functional Partners:
VM_01785
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.923
VM_01770
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.906
VM_01775
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.906
VM_01780
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.888
VM_01765
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.881
smg
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Smg family.
 
     0.841
dprA
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
VM_00200
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
VM_10840
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.753
VM_01445
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.717
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.