Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhtBHomoserine/homoserine lactone efflux protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
VM_18470
Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
VM_15500
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
VM_00635
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.725
VM_00620
Sugar/pyridoxal phosphate phosphatase YigL; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.690
VM_00625
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
gap-2
Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.522
VM_09540
MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
      
 0.489
nhaA
Na(+)/H(+) antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
      
 0.489
VM_19545
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
      
 0.489
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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