Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
VM_00725TonB-dependent vitamin B12 receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)    
Predicted Functional Partners:
VM_07230
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.813
VM_00730
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.805
VM_20135
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.781
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.775
VM_02800
Outer membrane channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.648
VM_06065
Surface protein Lk90-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.646
VM_14565
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.634
VM_17885
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
  
   
 0.622
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.607
VM_05485
LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.584
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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