STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_01415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
VM_01410
Phage tail protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
VM_01420
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
VM_01440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.528
VM_01450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.526
VM_01425
Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
VM_01430
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.521
VM_01435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
VM_01445
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
VM_01455
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
VM_01460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.