Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_01645phaC PHA synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)    
Predicted Functional Partners:
VM_17140
Protein viaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
VM_03395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
   0.633
VM_14380
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.632
VM_09585
Siderophore ferric iron reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
VM_06415
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
VM_00615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
VM_18695
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.586
VM_10630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
VM_19800
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.532
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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