STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_01800Cell division protein DamX; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.862
aroK
Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.775
VM_10645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
VM_00860
AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.757
VM_16130
Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
VM_03215
SMP protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
VM_05940
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
VM_13280
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
VM_19800
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.743
VM_08425
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.737
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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