Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_01825ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
VM_11335
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
VM_06855
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.601
VM_15445
3-deoxy-manno-octulosonate-8-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
VM_16175
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
VM_20560
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
VM_17620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.560
VM_12095
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.558
VM_14220
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
VM_17050
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
VM_09485
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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