VM_02290 protein (Vibrio mimicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VM_02290

RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (487 aa)

Predicted Functional Partners:

rpoS

0.961

ptsN

0.912

VM_02285

0.894

VM_05445

0.867

VM_04270

0.866

VM_10000

0.865

VM_02270

0.855

rpoZ

0.854

VM_02275

0.850

rpoB

0.848

Your Current Organism:

Vibrio mimicus

NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VM_02270	VM_02275	VM_02270	VM_02275	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	0.897
VM_02270	VM_02285	VM_02270	VM_02285	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
VM_02270	VM_02290	VM_02270	VM_02290	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.855
VM_02270	ptsN	VM_02270	VM_02280	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS IIA-like nitrogen-regulatory protein PtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
VM_02275	VM_02270	VM_02275	VM_02270	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
VM_02275	VM_02285	VM_02275	VM_02285	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
VM_02275	VM_02290	VM_02275	VM_02290	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.850
VM_02275	ptsN	VM_02275	VM_02280	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	PTS IIA-like nitrogen-regulatory protein PtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
VM_02285	VM_02270	VM_02285	VM_02270	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
VM_02285	VM_02275	VM_02285	VM_02275	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	0.939
VM_02285	VM_02290	VM_02285	VM_02290	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.894
VM_02285	ptsN	VM_02285	VM_02280	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS IIA-like nitrogen-regulatory protein PtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
VM_02290	VM_02270	VM_02290	VM_02270	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
VM_02290	VM_02275	VM_02290	VM_02275	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNase adaptor protein RapZ; Displays ATPase and GTPase activities.	0.850
VM_02290	VM_02285	VM_02290	VM_02285	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
VM_02290	VM_04270	VM_02290	VM_04270	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
VM_02290	VM_05445	VM_02290	VM_05445	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
VM_02290	VM_10000	VM_02290	VM_10000	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
VM_02290	ptsN	VM_02290	VM_02280	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PTS IIA-like nitrogen-regulatory protein PtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
VM_02290	rpoB	VM_02290	VM_13975	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848

page 1 of 2

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About