Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_02760Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)    
Predicted Functional Partners:
VM_02765
Phosphate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
VM_02770
TIGR00153 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
VM_02195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.623
VM_02775
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
VM_02810
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.533
VM_07945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
VM_10350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
   
 0.440
cca
2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
  
  
 0.423
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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