Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lacZbeta-D-galactosidase; Forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (1020 aa)    
Predicted Functional Partners:
VM_06505
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
galM
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.945
VM_13290
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.938
VM_12135
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.934
VM_03800
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.914
VM_16775
N-acetyl-beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.914
VM_06195
Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.643
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.591
VM_07005
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.538
VM_07170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.505
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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