rimK protein (Vibrio mimicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rimK

Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family. (301 aa)

Predicted Functional Partners:

VM_03515

0.996

VM_03505

0.963

VM_15615

0.774

VM_09045

0.763

VM_03520

0.702

arcA

0.489

fbp

0.460

fhs

0.453

VM_11595

0.402

Your Current Organism:

Vibrio mimicus

NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VM_03505	VM_03515	VM_03505	VM_03515	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
VM_03505	VM_03520	VM_03505	VM_03520	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosol nonspecific dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
VM_03505	VM_09045	VM_03505	VM_09045	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
VM_03505	VM_15615	VM_03505	VM_15615	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
VM_03505	rimK	VM_03505	VM_03510	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.963
VM_03515	VM_03505	VM_03515	VM_03505	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
VM_03515	VM_03520	VM_03515	VM_03520	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosol nonspecific dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
VM_03515	rimK	VM_03515	VM_03510	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.996
VM_03520	VM_03505	VM_03520	VM_03505	Cytosol nonspecific dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
VM_03520	VM_03515	VM_03520	VM_03515	Cytosol nonspecific dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
VM_03520	rimK	VM_03520	VM_03510	Cytosol nonspecific dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.702
VM_09045	VM_03505	VM_09045	VM_03505	ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
VM_09045	rimK	VM_09045	VM_03510	ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.763
VM_11595	rimK	VM_11595	VM_03510	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flavin oxidoreductase frp family.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.402
VM_15615	VM_03505	VM_15615	VM_03505	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
VM_15615	rimK	VM_15615	VM_03510	Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.774
arcA	rimK	VM_13405	VM_03510	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.489
fbp	rimK	VM_02215	VM_03510	Fructose-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FBPase class 1 family.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.460
fhs	rimK	VM_16325	VM_03510	Formate--tetrahydrofolate ligase; Catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family.	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	0.453
rimK	VM_03505	VM_03510	VM_03505	Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About