Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
flgMFlagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)    
Predicted Functional Partners:
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 0.995
VM_19795
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
 
 0.954
VM_03850
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.948
VM_03860
Flagella basal body P-ring formation protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.937
VM_04265
Flagellar export chaperone FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.923
fliS
Flagellar export chaperone FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.923
VM_03885
Flagellar biosynthesis protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.917
VM_19175
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.903
flgA
Flagella basal body P-ring formation protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.892
VM_03865
Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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